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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37891257_37894720_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
37891257 - 37894720
Intron Length:
3464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGAAGGA
5'SS Class:
major
3'SS Sequence:
AAAGCACCAGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GACAAAA
U12 Branch Point Sequence:
GTTTCCTGCAGG
Flanking Amino Acid:
ESWAVQAEQESRPRAHTPLI
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.1
55.5
37.9
Major BPS
47
-0.1
1.1
51.2
32
Major PPT
45.7
-0.2
1.1
37
33.7
Minor 5ss
22.3
-3.2
3.3
29.2
43.4
Minor BPS
47.9
-0.3
2.3
60.99
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009233
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009602
37891011 - 37894828
3818