About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37905962_37906676_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37905962 - 37906676
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GATCCCTGGAGT
Flanking Amino Acid:
KDPKANLQELWVRECGLTTA
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.8
41
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
93
0.97
0.6
88.6
20.7
Minor 5ss
44.3
-0.6
2.9
56
43.7
Minor BPS
49.4
0.04
1.8
67.6
42.6

Associated Gene:

Gene:
RNH1
Ensembl Gene ID:
ENSAPLG00000009242
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009645
37905013 - 37909431
4419