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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37906848_37907342_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37906848 - 37907342
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
GAAATAATATTT
Flanking Amino Acid:
LHPHCRIQKLWLWDCDLTSA
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
74.9
35.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
86.5
0.82
0.7
81.4
23.6
Minor 5ss
32.9
-1.9
3.7
43.1
45.5
Minor BPS
38.5
-0.7
1.8
49.82
36.8

Associated Gene:

Gene:
RNH1
Ensembl Gene ID:
ENSAPLG00000009242
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009645
37905013 - 37909431
4419