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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37907677_37910990_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
37907677 - 37910990
Intron Length:
3314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTACCTGTG
5'SS Class:
weak_major
3'SS Sequence:
CCCTGTGTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTTTCCTTCATT
Flanking Amino Acid:
NNNELGDAGIDLVCGCWGLT
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.8
0.07
1.3
51.9
45.4
Major BPS
75
0.62
1.1
77.2
36
Major PPT
68.9
0.43
0.9
59.8
40.5
Minor 5ss
42
-0.9
3.4
53.4
45
Minor BPS
79.8
1.02
1.6
95.75
31

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028523
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046362
37907640 - 37911869
4230