Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37911111_37911816_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37911111 - 37911816

Intron Length:

706

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCCATGCCT

5'SS Class:

major

3'SS Sequence:

CCTTCTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GACTAAC

U12 Branch Point Sequence:

TGAGGACTAACA

Flanking Amino Acid:

QEICFCSLPHRLDDCNLSSS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.2

66.3

Major BPS

59.1

0.23

1.2

61.6

34.1

Major PPT

86.6

0.82

0.7

84.2

23.8

Minor 5ss

18.6

-3.6

3.7

31.7

Minor BPS

41.9

-0.6

2.2

55.12

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028523

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046362

37907640 - 37911869

4230