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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37968225_37974180_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
37968225 - 37974180
Intron Length:
5956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TCTGCCTTACAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
70.5
38.9
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
79.3
0.66
0.8
72
32.7
Minor 5ss
29.5
-2.3
3.4
38.5
46.7
Minor BPS
52.1
-0
1.9
60.06
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009553
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042767
37956983 - 37994406
37424
ENSAPLT00000009963
37932030 - 37994406
62377