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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3798358_3824507_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3798358 - 3824507
Intron Length:
26150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TGGGCATTGAGA
Flanking Amino Acid:
MGLNNCRNEKERTRFENLGP
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75
35.5
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
88.4
0.86
0.8
80.8
36.8
Minor 5ss
39.4
-1.2
3.3
57.2
47
Minor BPS
46
-0.3
2
55.96
43.2

Associated Gene:

Gene:
SOX6
Ensembl Gene ID:
ENSAPLG00000008744
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026177
3768142 - 4008048
239907
ENSAPLT00000025325
3774651 - 4014215
239565
ENSAPLT00000022912
3768142 - 4089655
321514
ENSAPLT00000009100
3768142 - 4089655
321514