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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38010974_38012020_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38010974 - 38012020
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGAGAA
5'SS Class:
major
3'SS Sequence:
TTTTCCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
KRRGRKRQSTESSPQTSLNR
Intron Amino Acid Position:
1404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
72.5
32.2
Major BPS
100
1.24
0.5
100
0
Major PPT
84.7
0.78
0.7
77.6
31.2
Minor 5ss
26.1
-2.7
3
30
43
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
BAZ1A
Ensembl Gene ID:
ENSAPLG00000009786
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010234
38008138 - 38070056
61919