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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38021925_38024504_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38021925 - 38024504
Intron Length:
2580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
ATGTGCTTAATA
Flanking Amino Acid:
DDQDKFIVKDRLVGLKTEAP
Intron Amino Acid Position:
1034

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
78.5
35.6
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
79.1
0.65
0.9
77.4
36.3
Minor 5ss
36.6
-1.5
3
52
44.2
Minor BPS
66.2
0.51
1.8
73.39
39

Associated Gene:

Gene:
BAZ1A
Ensembl Gene ID:
ENSAPLG00000009786
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010234
38008138 - 38070056
61919