About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38028391_38029332_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38028391 - 38029332
Intron Length:
942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAACTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTCTTTTAACT
Flanking Amino Acid:
ELGPNKKGRRGRRGQNGYKE
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.6
37
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
81.4
0.71
0.8
79
34.3
Minor 5ss
35.6
-1.6
3.2
48.3
47.2
Minor BPS
81.3
1.06
1
92.89
28.4

Associated Gene:

Gene:
BAZ1A
Ensembl Gene ID:
ENSAPLG00000009786
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010234
38008138 - 38070056
61919