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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38029458_38030648_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38029458 - 38030648
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGATAA
5'SS Class:
major
3'SS Sequence:
GTAATTGCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTTTGTAATT
Flanking Amino Acid:
QKNPATEVSVGEEEREDLDT
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
66.6
35.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
65.9
0.36
1
62.1
44
Minor 5ss
42.9
-0.8
2.8
47
48.4
Minor BPS
65
0.55
2
86.64
33.8

Associated Gene:

Gene:
BAZ1A
Ensembl Gene ID:
ENSAPLG00000009786
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010234
38008138 - 38070056
61919