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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38032050_38032176_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38032050 - 38032176
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTGTG
5'SS Class:
major
3'SS Sequence:
TTCTCAACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTTCTCAACT
Flanking Amino Acid:
LAAAWPQLHQGCNLKNLDLD
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
68.8
42.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
73.3
0.52
0.8
67.7
32.5
Minor 5ss
41.9
-0.9
3.1
49
47.2
Minor BPS
73.9
0.83
1.5
87.74
37.8

Associated Gene:

Gene:
BAZ1A
Ensembl Gene ID:
ENSAPLG00000009786
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010234
38008138 - 38070056
61919