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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38032273_38035144_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38032273 - 38035144
Intron Length:
2872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGATCC
5'SS Class:
major
3'SS Sequence:
TATTTCCTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTTCCTTAAAG
Flanking Amino Acid:
KDQIADAETKDLTEALDEDA
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.3
69.5
36.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.5
0.57
1
75.6
33
Minor 5ss
34.6
-1.7
2.9
43.5
43.7
Minor BPS
79.2
0.78
1.4
79.57
36

Associated Gene:

Gene:
BAZ1A
Ensembl Gene ID:
ENSAPLG00000009786
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010234
38008138 - 38070056
61919