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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38035292_38035741_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38035292 - 38035741
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GCTTCTTAAACT
Flanking Amino Acid:
QDEFPEGVTLEVLEEALVGN
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98
1.13
0.7
82.9
36.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
78.9
0.65
0.9
72.8
35.9
Minor 5ss
31.6
-2.1
4
49.7
46.6
Minor BPS
67.2
0.62
1.7
80.14
42.2

Associated Gene:

Gene:
BAZ1A
Ensembl Gene ID:
ENSAPLG00000009786
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010234
38008138 - 38070056
61919