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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38037744_38038522_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38037744 - 38038522
Intron Length:
779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATGCAT
5'SS Class:
major
3'SS Sequence:
TGACTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
GTATCTTCAATA
Flanking Amino Acid:
KERLKIEKEKEREKLREEKR
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
65.2
40.4
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
83
0.74
0.9
80.7
36.7
Minor 5ss
34.2
-1.8
3.4
47.8
42.2
Minor BPS
62.9
0.4
1.5
69.34
37

Associated Gene:

Gene:
BAZ1A
Ensembl Gene ID:
ENSAPLG00000009786
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010234
38008138 - 38070056
61919