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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38060393_38069943_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38060393 - 38069943
Intron Length:
9551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGCCGC
5'SS Class:
major
3'SS Sequence:
CCCTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTCTTTCTCT
Flanking Amino Acid:
RVTNEIFRDYDDFFERTILC
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.1
51.7
45.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
85.6
0.8
0.7
83.4
24.9
Minor 5ss
39.5
-1.2
3.1
47.5
42.3
Minor BPS
47.9
-0
3.6
87.39
38.7

Associated Gene:

Gene:
BAZ1A
Ensembl Gene ID:
ENSAPLG00000009786
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010234
38008138 - 38070056
61919