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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_381267_383273_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
381267 - 383273
Intron Length:
2007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATGAAAA
Flanking Amino Acid:
IQPSVTAPISGFEPTSAPAP
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
81.9
0.72
0.8
81.2
30.9
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
56.6
0.2
1.8
71.17
40.3

Associated Gene:

Gene:
TEAD1
Ensembl Gene ID:
ENSAPLG00000016417
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017135
355120 - 508802
153683
ENSAPLT00000042611
355120 - 508802
153683
ENSAPLT00000040884
355120 - 508802
153683
ENSAPLT00000037311
355120 - 508802
153683