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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38129666_38130366_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38129666 - 38130366
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTGATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTGATGTTAATC
Flanking Amino Acid:
ATKARIPFYGSYTEMDPVII
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.6
94.3
17.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
73.5
0.53
1
73.7
40.6
Minor 5ss
40.3
-1.1
2.8
54
43.3
Minor BPS
52.3
0.05
2.1
66.1
40.2

Associated Gene:

Gene:
SRP54
Ensembl Gene ID:
ENSAPLG00000010125
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010605
38124961 - 38136110
11150