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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38131505_38132860_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38131505 - 38132860
Intron Length:
1356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TATTTTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TATTCCACAACC
Flanking Amino Acid:
GHAKGGGALSAVAATKSPII
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.3
75.3
40.8
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
84
0.76
0.8
78.7
34.1
Minor 5ss
39.3
-1.2
2.7
48.5
40.3
Minor BPS
63.5
0.4
1.8
77.57
37.5

Associated Gene:

Gene:
SRP54
Ensembl Gene ID:
ENSAPLG00000010125
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010605
38124961 - 38136110
11150