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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38132962_38133068_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38132962 - 38133068
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTAATGCTAACT
Flanking Amino Acid:
KTQPFISKLLGMGDIEGLID
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.9
34.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
44.6
-0.6
2.5
57.8
40.7
Minor BPS
47.8
-0
2.3
74.08
42.4

Associated Gene:

Gene:
SRP54
Ensembl Gene ID:
ENSAPLG00000010125
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010605
38124961 - 38136110
11150