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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38133620_38133860_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38133620 - 38133860
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTAGTTAT
5'SS Class:
major
3'SS Sequence:
ATTTTAAAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATTTTAAAACT
Flanking Amino Acid:
MKMGPFSQILGMIPGFGTDF
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
77.9
32.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
61.4
0.26
1
54.9
43.5
Minor 5ss
38.4
-1.3
2.8
48
42
Minor BPS
48.7
-0
1.9
69.02
42.2

Associated Gene:

Gene:
SRP54
Ensembl Gene ID:
ENSAPLG00000010125
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010605
38124961 - 38136110
11150