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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38135441_38135973_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38135441 - 38135973
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTTATTT
Flanking Amino Acid:
MMDPRVLHHMGGMAGLQSMM
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
77.9
36.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85
0.79
0.7
81.8
29.9
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
62.1
0.46
1.8
82.67
38.5

Associated Gene:

Gene:
SRP54
Ensembl Gene ID:
ENSAPLG00000010125
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010605
38124961 - 38136110
11150