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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38140198_38144175_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38140198 - 38144175
Intron Length:
3978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
TTCTTCATTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
AAACAMEPEPQLANGDRGFE
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
64.2
41.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.1
0.72
0.7
77.4
29.9
Minor 5ss
27.6
-2.6
3
34.8
41.4
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
FAM177A1
Ensembl Gene ID:
ENSAPLG00000023381
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024986
38140111 - 38154763
14653