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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38144393_38153611_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
38144393 - 38153611
Intron Length:
9219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTATAATTA
5'SS Class:
weak_major
3'SS Sequence:
TCTTTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTCTCTTTATTT
Flanking Amino Acid:
LVDKLLLLVYLCDFLGEKIA
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.9
0.14
1.1
58.5
34.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.5
0.91
0.7
88.8
26.9
Minor 5ss
49.5
-0
2.9
69.7
42.4
Minor BPS
62.4
0.47
1.6
74.81
43.2

Associated Gene:

Gene:
FAM177A1
Ensembl Gene ID:
ENSAPLG00000023381
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024986
38140111 - 38154763
14653