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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38153710_38154550_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38153710 - 38154550
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TACATATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
TAAACAGTAACT
Flanking Amino Acid:
IDEYYRMKKEEEEEEQENKL
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.9
Major BPS
66.4
0.41
1
61.3
37
Major PPT
77.4
0.62
0.9
73.7
40.3
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
48.8
-0
2.3
72.59
43.3

Associated Gene:

Gene:
FAM177A1
Ensembl Gene ID:
ENSAPLG00000023381
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024986
38140111 - 38154763
14653