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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38158008_38158698_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38158008 - 38158698
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTTTTACA
Flanking Amino Acid:
QEPVSFQDVKDEIFDMVKPK
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
95.6
1.03
0.5
91.4
20.1
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
77.6
0.86
1.5
87.29
30.4

Associated Gene:

Gene:
PPP2R3C
Ensembl Gene ID:
ENSAPLG00000010576
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011039
38157819 - 38170949
13131