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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38163499_38163571_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38163499 - 38163571
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGATC
5'SS Class:
strong_major
3'SS Sequence:
ATATTTCACTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TATTTCTGAATT
Flanking Amino Acid:
ACSFLDDLLELRDEELSKES
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.3
34.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
68.6
0.42
0.9
67.6
38.5
Minor 5ss
36.2
-1.6
3.4
51.2
45.7
Minor BPS
73.3
0.81
1.3
85.85
33.8

Associated Gene:

Gene:
PPP2R3C
Ensembl Gene ID:
ENSAPLG00000010576
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011039
38157819 - 38170949
13131