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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38163628_38164737_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38163628 - 38164737
Intron Length:
1110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TGACTGTTAAAA
Flanking Amino Acid:
FFFFLDPLRTGKIKIQDILA
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
85.6
0.8
0.8
80.9
31.1
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
47.4
-0.2
2.1
59.66
39.5

Associated Gene:

Gene:
PPP2R3C
Ensembl Gene ID:
ENSAPLG00000010576
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011039
38157819 - 38170949
13131