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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38164871_38165258_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38164871 - 38165258
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTAATTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CTTTTCTTAATT
Flanking Amino Acid:
VAGQGYLRESDLENYILELI
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81
33
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
79.7
0.67
0.9
73.4
36.7
Minor 5ss
36.5
-1.5
2.7
44.7
42.7
Minor BPS
83.2
1.12
1
91.07
32.9

Associated Gene:

Gene:
PPP2R3C
Ensembl Gene ID:
ENSAPLG00000010576
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011039
38157819 - 38170949
13131