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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38168863_38169372_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38168863 - 38169372
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACG
5'SS Class:
strong_major
3'SS Sequence:
AATGCCTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GTTTACTTAACC
Flanking Amino Acid:
RELLDNEELQNLWFLLDKHQ
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.1
36.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
61.7
0.26
1.1
57.3
42.7
Minor 5ss
33.8
-1.8
2.9
41.1
44.9
Minor BPS
79
0.89
1.4
84.69
33.3

Associated Gene:

Gene:
PPP2R3C
Ensembl Gene ID:
ENSAPLG00000010576
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011039
38157819 - 38170949
13131