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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38169478_38170598_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38169478 - 38170598
Intron Length:
1121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
ACAATGCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TATCACTGTACA
Flanking Amino Acid:
YSNIPRFYYRLPAEDEVLLQ
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
40.2
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
61.8
0.27
1
51.3
43
Minor 5ss
27.1
-2.6
2.9
24.3
36.8
Minor BPS
48
-0.1
2
64.57
40.9

Associated Gene:

Gene:
PPP2R3C
Ensembl Gene ID:
ENSAPLG00000010576
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011039
38157819 - 38170949
13131