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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38172491_38173585_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38172491 - 38173585
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
CTATGTACATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTTTCCCTATGT
Flanking Amino Acid:
LMRSIKLWFESIPGENWRGH
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
62.1
0.27
1
60.7
40
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
49.8
0.07
2.2
76.35
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010757
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011224
38171475 - 38216753
45279