About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38213085_38214548_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38213085 - 38214548
Intron Length:
1464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTGTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCTTTTCCATCT
Flanking Amino Acid:
NKADFFFAENISEDDAFLLY
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
69.6
0.44
1.1
74.9
39
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
45.5
-0.2
2
67.98
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010757
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011224
38171475 - 38216753
45279