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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38225245_38225516_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38225245 - 38225516
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGAAATTAATA
Flanking Amino Acid:
NIGCVMTGMTADSRSQVQRA
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.6
31.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.2
0.63
0.7
70.3
30.7
Minor 5ss
43.6
-0.7
2.6
59.8
44.7
Minor BPS
52.6
0.08
1.8
66.54
39.7

Associated Gene:

Gene:
PSMA6
Ensembl Gene ID:
ENSAPLG00000010919
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011378
38221085 - 38231205
10121