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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38225673_38227407_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38225673 - 38227407
Intron Length:
1735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTCCCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTTCCCTTCAAG
Flanking Amino Acid:
QNAEMRPLGCCMILIGIDEE
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
78
0.63
1
76.2
32.7
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
59.2
0.14
2
70.4
42.3

Associated Gene:

Gene:
PSMA6
Ensembl Gene ID:
ENSAPLG00000010919
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011378
38221085 - 38231205
10121