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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38227587_38229450_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38227587 - 38229450
Intron Length:
1864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTGG
5'SS Class:
strong_major
3'SS Sequence:
GGTCATCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAC
U12 Branch Point Sequence:
TTCTGGTTAATG
Flanking Amino Acid:
FDWTYEQTVETAITCLSTVL
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
69.7
43.7
Major BPS
67
0.42
1.1
57.7
39
Major PPT
74.6
0.55
0.9
69.7
41.2
Minor 5ss
38.2
-1.3
3.1
49.2
47.1
Minor BPS
48.8
-0.2
2.5
62.41
46.2

Associated Gene:

Gene:
PSMA6
Ensembl Gene ID:
ENSAPLG00000010919
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011378
38221085 - 38231205
10121