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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38229546_38231147_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38229546 - 38231147
Intron Length:
1602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAG
U12 Branch Point Sequence:
AATCATTGAAGC
Flanking Amino Acid:
GVVTVENPKFRILTEAEIDV
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
64.7
0.37
1.5
63.7
43.9
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
44.8
-0.4
1.8
53.64
37.3

Associated Gene:

Gene:
PSMA6
Ensembl Gene ID:
ENSAPLG00000010919
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011378
38221085 - 38231205
10121