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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3824699_3827265_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3824699 - 3827265
Intron Length:
2567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTACCTAAATA
Flanking Amino Acid:
GGSLGRGSSLDILSSLNSPA
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
90.9
28.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.9
0.7
0.8
75.8
32.8
Minor 5ss
47.2
-0.3
2.7
68.8
41.8
Minor BPS
64.8
0.46
1.7
74.51
37.2

Associated Gene:

Gene:
SOX6
Ensembl Gene ID:
ENSAPLG00000008744
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022912
3768142 - 4089655
321514
ENSAPLT00000009100
3768142 - 4089655
321514
ENSAPLT00000026177
3768142 - 4008048
239907
ENSAPLT00000025325
3774651 - 4014215
239565