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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38258595_38259090_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38258595 - 38259090
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATTAACA
Flanking Amino Acid:
ESEPEFTEDELMYDDCCIGG
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
73.6
37.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
90.8
0.92
0.7
88.9
28.1
Minor 5ss
34.7
-1.7
3.2
43.8
38
Minor BPS
73.5
0.73
1.7
84.69
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011028
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011490
38258547 - 38261425
2879