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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38259352_38259471_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38259352 - 38259471
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TATTTCCAAACA
Flanking Amino Acid:
LSLGADVNAQEPCNGRTALH
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
83.1
28.6
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
71.7
0.49
1
67.5
37.8
Minor 5ss
42.1
-0.9
2.5
53.5
43.9
Minor BPS
55.6
0.17
2
72.9
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011028
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011490
38258547 - 38261425
2879