Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38259561_38260073_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38259561 - 38260073

Intron Length:

513

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTACGCACA

5'SS Class:

major

3'SS Sequence:

TTATGTCTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAC

U12 Branch Point Sequence:

TTTACCTTCATT

Flanking Amino Acid:

LAVLQATNYNGHTCLHLASI

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.5

1.1

43.1

Major BPS

77.8

0.69

0.9

69.4

37.3

Major PPT

0.74

0.9

76.7

37.3

Minor 5ss

39.1

-1.2

50.2

45.9

Minor BPS

70.8

0.73

1.8

88.64

36.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011028

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011490

38258547 - 38261425

2879