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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38260285_38260766_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38260285 - 38260766
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTCA
5'SS Class:
major
3'SS Sequence:
GTTTTGCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
TGTAACTCACAG
Flanking Amino Acid:
FLNFQNNLSQTPLHLAVITD
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
70.7
35.9
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
80.5
0.69
0.9
74
36.8
Minor 5ss
39.5
-1.2
2.9
51.3
45.1
Minor BPS
41.3
-0.8
2
48.04
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011028
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011490
38258547 - 38261425
2879