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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3827447_3831389_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3827447 - 3831389
Intron Length:
3943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGCTT
5'SS Class:
major
3'SS Sequence:
TAAACTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTAAAC
Flanking Amino Acid:
RGTSPVTQVKDEAAQPLNLS
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
68
42.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
69.3
0.44
0.9
62.9
38.9
Minor 5ss
42.8
-0.8
3.4
65
46.3
Minor BPS
65.4
0.46
1.7
78.31
36.3

Associated Gene:

Gene:
SOX6
Ensembl Gene ID:
ENSAPLG00000008744
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026177
3768142 - 4008048
239907
ENSAPLT00000025325
3774651 - 4014215
239565
ENSAPLT00000022912
3768142 - 4089655
321514
ENSAPLT00000009100
3768142 - 4089655
321514