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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38308464_38309104_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38308464 - 38309104
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
APYHHLPSDTDH*
Intron Amino Acid Position:
2034

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.9
81.8
38.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.9
0.63
0.7
76
26.1
Minor 5ss
41.1
-1
2.9
57.9
46.4
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
RALGAPA1
Ensembl Gene ID:
ENSAPLG00000011153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025115
38299610 - 38426660
127051
ENSAPLT00000023971
38299610 - 38426660
127051
ENSAPLT00000011696
38299610 - 38426660
127051