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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3831540_3855667_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3831540 - 3855667
Intron Length:
24128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TATTGTATATCT
Flanking Amino Acid:
ASGLSPLQLQQLYAAQLASM
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
85.3
0.8
0.8
76.9
37.3
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
47.8
-0
2.2
73.86
43

Associated Gene:

Gene:
SOX6
Ensembl Gene ID:
ENSAPLG00000008744
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025325
3774651 - 4014215
239565
ENSAPLT00000022912
3768142 - 4089655
321514
ENSAPLT00000009100
3768142 - 4089655
321514
ENSAPLT00000026177
3768142 - 4008048
239907