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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_383336_384224_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
383336 - 384224
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
CTATTTATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTGTGTAACT
Flanking Amino Acid:
IQTGQPGSSQDVKPFVQQAY
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
69.9
41.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.9
0.72
0.9
73.9
40.2
Minor 5ss
40.1
-1.1
3
50.3
40.1
Minor BPS
59
0.36
2.4
87.23
39

Associated Gene:

Gene:
TEAD1
Ensembl Gene ID:
ENSAPLG00000016417
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017135
355120 - 508802
153683
ENSAPLT00000042611
355120 - 508802
153683
ENSAPLT00000040884
355120 - 508802
153683
ENSAPLT00000037311
355120 - 508802
153683