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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38339537_38340228_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38339537 - 38340228
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTACTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTTTCCCTAATG
Flanking Amino Acid:
EDFVAGLGWEVNLTNHCGFM
Intron Amino Acid Position:
1845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
75
0.62
1
65.3
41.5
Major PPT
76.7
0.6
0.8
70.9
34.3
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
73.4
0.6
1.7
80.27
35.6

Associated Gene:

Gene:
RALGAPA1
Ensembl Gene ID:
ENSAPLG00000011153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025115
38299610 - 38426660
127051
ENSAPLT00000023971
38299610 - 38426660
127051
ENSAPLT00000011696
38299610 - 38426660
127051