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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38341741_38343276_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38341741 - 38343276
Intron Length:
1536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
ATTTCTCTATTT
Flanking Amino Acid:
SILGMNSWDKRRSFHLLKKN
Intron Amino Acid Position:
1779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
71.1
35.5
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
82.3
0.73
0.8
82.1
28.7
Minor 5ss
36.7
-1.5
3.1
47.8
47.6
Minor BPS
56.1
0.27
1.9
78.83
37.8

Associated Gene:

Gene:
RALGAPA1
Ensembl Gene ID:
ENSAPLG00000011153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025115
38299610 - 38426660
127051
ENSAPLT00000023971
38299610 - 38426660
127051
ENSAPLT00000011696
38299610 - 38426660
127051