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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38344142_38350946_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38344142 - 38350946
Intron Length:
6805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGAA
5'SS Class:
major
3'SS Sequence:
CTTCCTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
CTTACTTTAAAA
Flanking Amino Acid:
RSSKLQPVTEVKTHMQQGLI
Intron Amino Acid Position:
1491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
71.4
33.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
83.9
0.76
0.7
79
26.6
Minor 5ss
34.4
-1.8
2.9
40.7
45.6
Minor BPS
67
0.53
1.4
73.22
38.6

Associated Gene:

Gene:
RALGAPA1
Ensembl Gene ID:
ENSAPLG00000011153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025115
38299610 - 38426660
127051
ENSAPLT00000023971
38299610 - 38426660
127051
ENSAPLT00000011696
38299610 - 38426660
127051