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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38351131_38351600_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38351131 - 38351600
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATGTT
5'SS Class:
major
3'SS Sequence:
GGTTTTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATGTGATGAAAT
Flanking Amino Acid:
ERSVLNCIYKVLHGCVYGSQ
Intron Amino Acid Position:
1430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
78.8
35.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74.1
0.54
1
65.8
45.3
Minor 5ss
36.9
-1.5
3.7
57.9
46.7
Minor BPS
45.2
-0.2
2.1
66.09
43.8

Associated Gene:

Gene:
RALGAPA1
Ensembl Gene ID:
ENSAPLG00000011153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023971
38299610 - 38426660
127051
ENSAPLT00000011696
38299610 - 38426660
127051
ENSAPLT00000025115
38299610 - 38426660
127051